From issues at mygrid.org.uk Wed Jan 2 15:17:33 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Wed, 2 Jan 2013 15:17:33 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-679) Test SSL In-Reply-To: <7008757.20.1311763964719.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <529736340.2325.1357139853543.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-679?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Robert Haines resolved BIOCAT-679. ---------------------------------- Resolution: Fixed Running BioCat under SSL (with Apache doing the heavy lifting) is working perfectly well for biodivCat. > Test SSL > -------- > > Key: BIOCAT-679 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-679 > Project: BioCatalogue > Issue Type: Task > Components: Misc Codebase > Reporter: Mannie Tagarira > Assignee: Robert Haines > Priority: Blocker > Fix For: 1.3.0 > > -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Wed Jan 2 16:29:33 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Wed, 2 Jan 2013 16:29:33 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-607) Refactor out annotation values as first class polymorphic objects In-Reply-To: <22920035.1301.1307630815347.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <685963067.2327.1357144173630.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-607?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Robert Haines resolved BIOCAT-607. ---------------------------------- Resolution: Fixed This is done. I think. I'm closing this issue as fixed to draw a line under it - we've been using the code for months anyway. Any issues the arise from now on can be treated as new problems to be fixed. > Refactor out annotation values as first class polymorphic objects > ----------------------------------------------------------------- > > Key: BIOCAT-607 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-607 > Project: BioCatalogue > Issue Type: Improvement > Components: Annotations (in App), Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Robert Haines > Priority: Blocker > Fix For: 1.2.1 > > Time Spent: 2 days, 4 hours > Remaining Estimate: 0 minutes > > Currently, values in annotations are just a string. This needs to be stripped out into first class objects such as: > - Tag > - Code / Script (?) > - TextValue (should be made available in plugin) > etc. > This will help with performance as then you wouldn't need to do GROUP BY queries on strings in the db, and in general it would be nicer model to worth with. > BUT NOTE: this would require some comprehensive and meticulous fine-combing of the whole system to ensure nothing breaks as a result. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Jan 7 11:02:32 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Mon, 7 Jan 2013 11:02:32 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-719) password reset email gives wrong URL! Message-ID: <1304492048.2401.1357556552420.JavaMail.jira@proteus> password reset email gives wrong URL! ------------------------------------- Key: BIOCAT-719 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-719 Project: BioCatalogue Issue Type: Bug Components: User Management, Web Interface Affects Versions: 1.2.0 Reporter: Robert Haines Assignee: Robert Haines Priority: Blocker Fix For: 1.2.1 The email says: {code} A password reset has been requested for your BioCatalogue account. Please click on the following link to reset your password (you might need to copy/paste it into your browser): http://www.biocatalogue.org/users/reset_password?security_token=8dd91eba3b3887af81ad2c16c9538d2f84099dc2 {code} But the URL is wrong! It should be: {code} http://www.biocatalogue.org/reset_password/8dd91eba3b3887af81ad2c16c9538d2f84099dc2 {code} -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Jan 7 17:27:35 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Mon, 7 Jan 2013 17:27:35 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-719) password reset email gives wrong URL! In-Reply-To: <1304492048.2401.1357556552420.JavaMail.jira@proteus> Message-ID: <1704397753.2437.1357579655242.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-719?page=com.atlassian.jira.plugin.system.issuetabpanels:worklog-tabpanel\#worklog-{worklog.getId()} ] Robert Haines logged work on BIOCAT-719: ---------------------------------------- Author: Robert Haines Created on: 2013-01-07 17:26 Start Date: 2013-01-07 17:26 Worklog Time Spent: 2 hours Issue Time Tracking ------------------- Remaining Estimate: 0 minutes (was: 1 hour) Time Spent: 2 hours Worklog Id: (was: 10628) > password reset email gives wrong URL! > ------------------------------------- > > Key: BIOCAT-719 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-719 > Project: BioCatalogue > Issue Type: Bug > Components: User Management, Web Interface > Affects Versions: 1.2.0 > Reporter: Robert Haines > Assignee: Robert Haines > Priority: Blocker > Fix For: 1.2.1 > > Original Estimate: 1 hour > Time Spent: 2 hours > Remaining Estimate: 0 minutes > > The email says: > {code} > A password reset has been requested for your BioCatalogue account. > Please click on the following link to reset your password (you might need to copy/paste it into your browser): > http://www.biocatalogue.org/users/reset_password?security_token=8dd91eba3b3887af81ad2c16c9538d2f84099dc2 > {code} > But the URL is wrong! > It should be: > {code} > http://www.biocatalogue.org/reset_password/8dd91eba3b3887af81ad2c16c9538d2f84099dc2 > {code} -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Jan 7 17:27:32 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Mon, 7 Jan 2013 17:27:32 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-719) password reset email gives wrong URL! In-Reply-To: <1304492048.2401.1357556552420.JavaMail.jira@proteus> Message-ID: <1464581061.2436.1357579652443.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-719?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=18544#comment-18544 ] Robert Haines commented on BIOCAT-719: -------------------------------------- This is odd. I cannot replicate this anywhere other than on the EBI BioCatalogue deployments (main and test). I have requested a copy of {{rake routes}} to see if there are any clues there. > password reset email gives wrong URL! > ------------------------------------- > > Key: BIOCAT-719 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-719 > Project: BioCatalogue > Issue Type: Bug > Components: User Management, Web Interface > Affects Versions: 1.2.0 > Reporter: Robert Haines > Assignee: Robert Haines > Priority: Blocker > Fix For: 1.2.1 > > Original Estimate: 1 hour > Remaining Estimate: 1 hour > > The email says: > {code} > A password reset has been requested for your BioCatalogue account. > Please click on the following link to reset your password (you might need to copy/paste it into your browser): > http://www.biocatalogue.org/users/reset_password?security_token=8dd91eba3b3887af81ad2c16c9538d2f84099dc2 > {code} > But the URL is wrong! > It should be: > {code} > http://www.biocatalogue.org/reset_password/8dd91eba3b3887af81ad2c16c9538d2f84099dc2 > {code} -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Jan 7 18:07:32 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Mon, 7 Jan 2013 18:07:32 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-124) Get recently registered or updated services Message-ID: <975598833.2438.1357582052426.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-124?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Robert Haines resolved BIOCAT-124. ---------------------------------- Resolution: Won't Fix The news feed now provides this information. > Get recently registered or updated services > ------------------------------------------- > > Key: BIOCAT-124 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-124 > Project: BioCatalogue > Issue Type: New Feature > Components: Homepage, Search / Filtering / Browsing, Web Interface > Reporter: Franck Tanoh > Assignee: Robert Haines > Fix For: Future > > > From the 20Q's, Q4 - > "Which are the most recently updated services?", "Which are the most recently registered services?", "Most search services?" > - possibility to filter services based on these factors. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Tue Jan 8 10:24:32 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Tue, 8 Jan 2013 10:24:32 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-299) Allow updating of the geolocation data for service deployments Message-ID: <2068893313.2439.1357640672496.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-299?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Robert Haines resolved BIOCAT-299. ---------------------------------- Resolution: Fixed This is fixed in the code and deployed to BiodiversityCatalogue. > Allow updating of the geolocation data for service deployments > -------------------------------------------------------------- > > Key: BIOCAT-299 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-299 > Project: BioCatalogue > Issue Type: New Feature > Components: Curation Dashboard, Service Container, Web Interface > Reporter: Jiten Bhagat > Assignee: Robert Haines > Priority: Minor > Fix For: 1.2.1 > > > An existing script (regelocate.rb) can do this on an ad hoc basis, but support for this needs to be available in the main web UI and curation dashboard. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Tue Jan 8 10:28:32 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Tue, 8 Jan 2013 10:28:32 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-106) Allow the submitter to select a display name for a service Message-ID: <1527073350.2440.1357640912429.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-106?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Robert Haines resolved BIOCAT-106. ---------------------------------- Resolution: Fixed This is fixed. The follow-up issue mentioned by Alan is BIOCAT-681. > Allow the submitter to select a display name for a service > ---------------------------------------------------------- > > Key: BIOCAT-106 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-106 > Project: BioCatalogue > Issue Type: New Feature > Components: Annotations (in App), Web Interface > Affects Versions: 1.0.0 > Reporter: Jiten Bhagat > Assignee: Robert Haines > Fix For: 1.2.1 > > > "I have a suggestion -- you allow people to add name aliases for services, but it would be really useful if you could tag one as the primary display name. > I wouldn't be surprised if quite a lot of the services out there have fairly unfriendly names in the WSDLs. > The EMBRACE Registry lets you enter a title for the service, which is what comes up in the human-readable web page, rather than the computer-readable name from the WSDL." > Posted by Andrew on the Biocat support list -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Tue Jan 8 16:23:33 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Tue, 8 Jan 2013 16:23:33 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-720) Can't edit a REST endpoint name - button there but not implemented! Message-ID: <416262900.2462.1357662213720.JavaMail.jira@proteus> Can't edit a REST endpoint name - button there but not implemented! ------------------------------------------------------------------- Key: BIOCAT-720 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-720 Project: BioCatalogue Issue Type: Bug Components: Web Interface Affects Versions: 1.2.0 Reporter: Robert Haines Assignee: Robert Haines Fix For: 1.2.1 Clicking the edit box immediately pops up an error box as the code needed behind it does not exist! -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Tue Jan 8 17:37:35 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Tue, 8 Jan 2013 17:37:35 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-720) Can't edit a REST endpoint name - button there but not implemented! In-Reply-To: <416262900.2462.1357662213720.JavaMail.jira@proteus> Message-ID: <462598949.2464.1357666655535.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-720?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Robert Haines resolved BIOCAT-720. ---------------------------------- Resolution: Fixed > Can't edit a REST endpoint name - button there but not implemented! > ------------------------------------------------------------------- > > Key: BIOCAT-720 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-720 > Project: BioCatalogue > Issue Type: Bug > Components: Web Interface > Affects Versions: 1.2.0 > Reporter: Robert Haines > Assignee: Robert Haines > Fix For: 1.2.1 > > Original Estimate: 2 hours > Time Spent: 2 hours, 30 minutes > Remaining Estimate: 0 minutes > > Clicking the edit box immediately pops up an error box as the code needed behind it does not exist! -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Tue Jan 8 17:37:32 2013 From: issues at mygrid.org.uk (Robert Haines (JIRA)) Date: Tue, 8 Jan 2013 17:37:32 +0000 (GMT) Subject: [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-720) Can't edit a REST endpoint name - button there but not implemented! In-Reply-To: <416262900.2462.1357662213720.JavaMail.jira@proteus> Message-ID: <1755374062.2463.1357666652436.JavaMail.jira@proteus> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-720?page=com.atlassian.jira.plugin.system.issuetabpanels:worklog-tabpanel\#worklog-{worklog.getId()} ] Robert Haines logged work on BIOCAT-720: ---------------------------------------- Author: Robert Haines Created on: 2013-01-08 17:35 Start Date: 2013-01-08 17:35 Worklog Time Spent: 2 hours, 30 minutes Issue Time Tracking ------------------- Remaining Estimate: 0 minutes (was: 2 hours) Time Spent: 2 hours, 30 minutes Worklog Id: (was: 10629) > Can't edit a REST endpoint name - button there but not implemented! > ------------------------------------------------------------------- > > Key: BIOCAT-720 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-720 > Project: BioCatalogue > Issue Type: Bug > Components: Web Interface > Affects Versions: 1.2.0 > Reporter: Robert Haines > Assignee: Robert Haines > Fix For: 1.2.1 > > Original Estimate: 2 hours > Time Spent: 2 hours, 30 minutes > Remaining Estimate: 0 minutes > > Clicking the edit box immediately pops up an error box as the code needed behind it does not exist! -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira