From issues at mygrid.org.uk Thu Sep 1 07:43:41 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 1 Sep 2011 12:43:41 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-688) Make annotation value creation pluggable In-Reply-To: <1772809.235.1314710081898.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <30857768.270.1314877421835.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-688?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17469#comment-17469 ] Jiten Bhagat commented on BIOCAT-688: ------------------------------------- Done in Annotations plugin. Now needs to be integrated into main app. > Make annotation value creation pluggable > ---------------------------------------- > > Key: BIOCAT-688 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-688 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > Currently, when setting {{#value}} on an {{Annotation}} object, {{TextValue}} or {{NumberValue}} objects are created for {{String}} and {{Numeric}} data (accordingly). > Make this configurable and pluggable so other value object types can be created based on the attribute name, e.g. {{Tag}} and {{Category}} objects. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Thu Sep 1 09:44:41 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 1 Sep 2011 14:44:41 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-687) Add validation in Annotation model to check for correct value type of annotation values In-Reply-To: <2759905.234.1314709361746.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <31721379.272.1314884681748.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-687?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17472#comment-17472 ] Jiten Bhagat commented on BIOCAT-687: ------------------------------------- Done in Annotations plugin. Now needs to be integrated into app. > Add validation in Annotation model to check for correct value type of annotation values > --------------------------------------------------------------------------------------- > > Key: BIOCAT-687 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-687 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App), Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > I.e.: > - "tag" annotations can only have Tag objects as values. > - "category" annotations can only have Category objects as values. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Thu Sep 1 10:21:21 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Thu, 1 Sep 2011 10:21:21 -0400 (EDT) Subject: [BioCatalogue-developers] [2502] branches/v1.1.0: [BIOCAT-688] Make annotation value creation pluggable Message-ID: <20110901142121.BEE29158806D@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Thu Sep 1 10:22:41 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 1 Sep 2011 15:22:41 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-687) Add validation in Annotation model to check for correct value type of annotation values In-Reply-To: <2759905.234.1314709361746.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <29586858.273.1314886961784.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-687?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17473#comment-17473 ] Jiten Bhagat commented on BIOCAT-687: ------------------------------------- Integrated into app in revision 2502. > Add validation in Annotation model to check for correct value type of annotation values > --------------------------------------------------------------------------------------- > > Key: BIOCAT-687 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-687 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App), Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > I.e.: > - "tag" annotations can only have Tag objects as values. > - "category" annotations can only have Category objects as values. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Thu Sep 1 10:22:47 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 1 Sep 2011 15:22:47 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-688) Make annotation value creation pluggable In-Reply-To: <1772809.235.1314710081898.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <30546711.274.1314886967043.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-688?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-688. --------------------------------- Resolution: Fixed > Make annotation value creation pluggable > ---------------------------------------- > > Key: BIOCAT-688 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-688 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > Currently, when setting {{#value}} on an {{Annotation}} object, {{TextValue}} or {{NumberValue}} objects are created for {{String}} and {{Numeric}} data (accordingly). > Make this configurable and pluggable so other value object types can be created based on the attribute name, e.g. {{Tag}} and {{Category}} objects. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Thu Sep 1 10:22:49 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 1 Sep 2011 15:22:49 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-688) Make annotation value creation pluggable In-Reply-To: <1772809.235.1314710081898.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <28600590.275.1314886969335.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-688?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17474#comment-17474 ] Jiten Bhagat commented on BIOCAT-688: ------------------------------------- Done in app in revision 2502. > Make annotation value creation pluggable > ---------------------------------------- > > Key: BIOCAT-688 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-688 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > Currently, when setting {{#value}} on an {{Annotation}} object, {{TextValue}} or {{NumberValue}} objects are created for {{String}} and {{Numeric}} data (accordingly). > Make this configurable and pluggable so other value object types can be created based on the attribute name, e.g. {{Tag}} and {{Category}} objects. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Thu Sep 1 10:22:52 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 1 Sep 2011 15:22:52 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-687) Add validation in Annotation model to check for correct value type of annotation values In-Reply-To: <2759905.234.1314709361746.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <16050052.276.1314886972174.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-687?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-687. --------------------------------- Resolution: Fixed > Add validation in Annotation model to check for correct value type of annotation values > --------------------------------------------------------------------------------------- > > Key: BIOCAT-687 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-687 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App), Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > I.e.: > - "tag" annotations can only have Tag objects as values. > - "category" annotations can only have Category objects as values. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Mon Sep 5 09:36:58 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 5 Sep 2011 09:36:58 -0400 (EDT) Subject: [BioCatalogue-developers] [2503] branches/v1.1.0/script/biocatalogue/migrate_display_names_jul11.rb: Minor comment fix Message-ID: <20110905133658.E6807185834E@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Mon Sep 5 09:44:41 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 5 Sep 2011 09:44:41 -0400 (EDT) Subject: [BioCatalogue-developers] [2504] branches/v1.1.0: [BIOCAT-690] Fix the URL monitors that use Annotations as the source of the URL to monitor . Message-ID: <20110905134441.1B2A8185834E@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Mon Sep 5 09:45:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 5 Sep 2011 14:45:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-690) Fix the URL monitors that use Annotations as the source of the URL to monitor Message-ID: <14576609.2.1315230314235.JavaMail.jira@rosalind.cs.man.ac.uk> Fix the URL monitors that use Annotations as the source of the URL to monitor ----------------------------------------------------------------------------- Key: BIOCAT-690 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-690 Project: BioCatalogue Issue Type: Sub-task Components: Service Monitoring Reporter: Jiten Bhagat Assignee: Jiten Bhagat Fix For: 1.1.0 Currently, some URL monitors use Annotations as the source of the URL that needs to be monitored. However, the "property" it calls on the Annotation object is "value", which is now invalid. Need to change this to "value_content". Also write a script to fix the db entries, to be run on the test and live sites. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Mon Sep 5 10:09:09 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 5 Sep 2011 10:09:09 -0400 (EDT) Subject: [BioCatalogue-developers] [2505] branches/v1.1.0: Various fixes to make the API tests pass Message-ID: <20110905140909.4E668185834E@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Mon Sep 5 11:16:27 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 5 Sep 2011 11:16:27 -0400 (EDT) Subject: [BioCatalogue-developers] [2506] branches/v1.1.0: Updated to latest Annotations plugin (v0.4.1) and optimised some of the calls to fetch annotations - include value records in the query wherever possible . Message-ID: <20110905151628.559D3185834E@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Mon Sep 5 11:28:36 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 5 Sep 2011 11:28:36 -0400 (EDT) Subject: [BioCatalogue-developers] [2507] branches/v1.1.0: Include annotation values in the query wherever possible. Message-ID: <20110905152836.6D4191D78101@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Mon Sep 5 12:20:22 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 5 Sep 2011 12:20:22 -0400 (EDT) Subject: [BioCatalogue-developers] [2508] branches/v1.1.0/config/environment.rb: Some debug code Message-ID: <20110905162022.E6F8E185834E@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Tue Sep 6 07:05:03 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Tue, 6 Sep 2011 07:05:03 -0400 (EDT) Subject: [BioCatalogue-developers] [2509] branches/v1.1.0/test/unit/annotation_test.rb: Removed invalid test Message-ID: <20110906110504.6309F167835D@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Tue Sep 6 07:22:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Tue, 6 Sep 2011 12:22:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-690) Fix the URL monitors that use Annotations as the source of the URL to monitor In-Reply-To: <14576609.2.1315230314235.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <8548682.14.1315308134311.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-690?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-690. --------------------------------- Resolution: Fixed Done > Fix the URL monitors that use Annotations as the source of the URL to monitor > ----------------------------------------------------------------------------- > > Key: BIOCAT-690 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-690 > Project: BioCatalogue > Issue Type: Sub-task > Components: Service Monitoring > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Fix For: 1.1.0 > > > Currently, some URL monitors use Annotations as the source of the URL that needs to be monitored. However, the "property" it calls on the Annotation object is "value", which is now invalid. Need to change this to "value_content". > Also write a script to fix the db entries, to be run on the test and live sites. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Tue Sep 6 07:22:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Tue, 6 Sep 2011 12:22:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-691) Update ALL remaining parts of the codebase that has been affected by the polymorphic annotation value changes Message-ID: <32054700.15.1315308137266.JavaMail.jira@rosalind.cs.man.ac.uk> Update ALL remaining parts of the codebase that has been affected by the polymorphic annotation value changes ------------------------------------------------------------------------------------------------------------- Key: BIOCAT-691 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-691 Project: BioCatalogue Issue Type: Sub-task Reporter: Jiten Bhagat Assignee: Jiten Bhagat Priority: Blocker Fix For: 1.1.0 -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Tue Sep 6 07:26:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Tue, 6 Sep 2011 12:26:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-692) For the Annotations data v3 migration ensure that all legacy FETA annotations have values that are Tag objects Message-ID: <33413041.16.1315308374237.JavaMail.jira@rosalind.cs.man.ac.uk> For the Annotations data v3 migration ensure that all legacy FETA annotations have values that are Tag objects -------------------------------------------------------------------------------------------------------------- Key: BIOCAT-692 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-692 Project: BioCatalogue Issue Type: Sub-task Components: Annotations (in App) Reporter: Jiten Bhagat Assignee: Jiten Bhagat Priority: Critical Fix For: 1.1.0 This affects annotations that have the following attribute names: {code} MYGRID_ONTOLOGY_ATTRIBUTES = [ "".downcase, "".downcase, "".downcase, "".downcase, "".downcase, "".downcase ].freeze {code} -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Mon Sep 12 09:01:06 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 12 Sep 2011 09:01:06 -0400 (EDT) Subject: [BioCatalogue-developers] [2510] branches/v1.1.0: [BIOCAT-692] Done: For the Annotations data v3 migration ensure that all legacy FETA annotations have values that are Tag objects . Message-ID: <20110912130106.298BA1D78101@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Mon Sep 12 09:02:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 14:02:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-692) For the Annotations data v3 migration ensure that all legacy FETA annotations have values that are Tag objects In-Reply-To: <33413041.16.1315308374237.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <9644709.41.1315832534318.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-692?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-692. --------------------------------- Resolution: Implemented Implemented in revision 2510 > For the Annotations data v3 migration ensure that all legacy FETA annotations have values that are Tag objects > -------------------------------------------------------------------------------------------------------------- > > Key: BIOCAT-692 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-692 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App) > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > This affects annotations that have the following attribute names: > {code} > MYGRID_ONTOLOGY_ATTRIBUTES = [ > "".downcase, > "".downcase, > "".downcase, > "".downcase, > "".downcase, > "".downcase > ].freeze > {code} -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Sep 12 09:04:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 14:04:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-666) May need to manually delete the db index on the 'value' column in the annotations table In-Reply-To: <161349.2767.1310037115390.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <10041822.42.1315832654267.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-666?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-666. --------------------------------- Resolution: No longer relevant This doesn't seem to be an issue > May need to manually delete the db index on the 'value' column in the annotations table > --------------------------------------------------------------------------------------- > > Key: BIOCAT-666 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-666 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App) > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > May need to add this to the new migration script -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Mon Sep 12 09:45:11 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 12 Sep 2011 09:45:11 -0400 (EDT) Subject: [BioCatalogue-developers] [2511] branches/v1.1.0/app/models/annotation.rb: Fix for making sure that annotations with values that are Tag or Category objects are shown properly in the API outputs Message-ID: <20110912134511.352A11D78101@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Mon Sep 12 09:55:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 14:55:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-672) Need to take into account the annotation versions In-Reply-To: <23658552.2791.1310043955350.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <12457437.44.1315835714302.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-672?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-672. --------------------------------- Resolution: Implemented > Need to take into account the annotation versions > ------------------------------------------------- > > Key: BIOCAT-672 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-672 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations Plugin > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Blocker > Fix For: 1.1.0 > > > Annotations are versioned in a separate table (annotation_versions). This take into account changes to the old text 'value' column. > Now that values are moved out and made to be polymorphic, the migration of the annotations needs to migrate all the existing versions. But to where? > Maybe have the TextField model be versioned too, separately. So any changes to it's content/value column results in a new version of itself BUT not a new version of the annotation. > The migration of the old annotations needs to take this into consideration. It needs to emulate the state that this new way of versioning would have created. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Sep 12 09:55:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 14:55:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-669) Test new migration script In-Reply-To: <30217599.2778.1310039215357.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <22026523.45.1315835717374.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-669?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-669. --------------------------------- Resolution: Implemented > Test new migration script > ------------------------- > > Key: BIOCAT-669 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-669 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App) > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > Can test this out on a small dataset with all kinds of annotations in it, then test it on the latest db snapshot -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Sep 12 09:55:19 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 14:55:19 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-667) Implement migration script to move all annotation values into appropriate models In-Reply-To: <5396534.2776.1310038979944.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <2319655.46.1315835719469.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-667?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-667. --------------------------------- Resolution: Implemented > Implement migration script to move all annotation values into appropriate models > -------------------------------------------------------------------------------- > > Key: BIOCAT-667 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-667 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App) > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Blocker > Fix For: 1.1.0 > > > Add this to the v3 migration script from the annotations plugin -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Mon Sep 12 10:06:53 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 12 Sep 2011 10:06:53 -0400 (EDT) Subject: [BioCatalogue-developers] [2512] branches/v1.1.0/app/views/services: Rename "news" tab on service show page to "history" to make it more obvious what it' s about Message-ID: <20110912140653.254261D78101@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Mon Sep 12 10:09:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 15:09:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-693) Rename "news" tab on service show page to "history" to make it more obvious what it's about Message-ID: <11238327.47.1315836554264.JavaMail.jira@rosalind.cs.man.ac.uk> Rename "news" tab on service show page to "history" to make it more obvious what it's about ------------------------------------------------------------------------------------------- Key: BIOCAT-693 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-693 Project: BioCatalogue Issue Type: Refinement Components: Web Interface Affects Versions: 1.0.1 Reporter: Jiten Bhagat Assignee: Jiten Bhagat Fix For: 1.1.0 -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Sep 12 10:09:16 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 15:09:16 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-693) Rename "news" tab on service show page to "history" to make it more obvious what it's about In-Reply-To: <11238327.47.1315836554264.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <33221620.48.1315836556572.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-693?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-693. --------------------------------- Resolution: Fixed Done in revision 2512 > Rename "news" tab on service show page to "history" to make it more obvious what it's about > ------------------------------------------------------------------------------------------- > > Key: BIOCAT-693 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-693 > Project: BioCatalogue > Issue Type: Refinement > Components: Web Interface > Affects Versions: 1.0.1 > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Fix For: 1.1.0 > > -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Mon Sep 12 10:14:14 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Mon, 12 Sep 2011 15:14:14 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-694) Make the monitoring tab on the service show page load up asynchronously Message-ID: <8275594.49.1315836854244.JavaMail.jira@rosalind.cs.man.ac.uk> Make the monitoring tab on the service show page load up asynchronously ----------------------------------------------------------------------- Key: BIOCAT-694 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-694 Project: BioCatalogue Issue Type: Improvement Components: Web Interface Affects Versions: 1.0.1 Reporter: Jiten Bhagat Assignee: Jiten Bhagat Fix For: 1.1.0 ... like how the activity feed is being loaded up. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Wed Sep 14 08:26:04 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Wed, 14 Sep 2011 08:26:04 -0400 (EDT) Subject: [BioCatalogue-developers] [2513] branches/v1.1.0: [BIOCAT-694] Make the monitoring tab on the service show page load up asynchronously Message-ID: <20110914122605.72320185837D@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Wed Sep 14 08:27:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Wed, 14 Sep 2011 13:27:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-694) Make the monitoring tab on the service show page load up asynchronously In-Reply-To: <8275594.49.1315836854244.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <5429360.1.1316003237240.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-694?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-694. --------------------------------- Resolution: Implemented Done in revision 2513 > Make the monitoring tab on the service show page load up asynchronously > ----------------------------------------------------------------------- > > Key: BIOCAT-694 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-694 > Project: BioCatalogue > Issue Type: Improvement > Components: Web Interface > Affects Versions: 1.0.1 > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Fix For: 1.1.0 > > > ... like how the activity feed is being loaded up. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Wed Sep 14 08:34:34 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Wed, 14 Sep 2011 08:34:34 -0400 (EDT) Subject: [BioCatalogue-developers] [2514] branches/v1.1.0: [BIOCAT-519] Implement an initial "Examples" tab on the Service profile page. Message-ID: <20110914123434.EA2521858386@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Wed Sep 14 08:38:19 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Wed, 14 Sep 2011 08:38:19 -0400 (EDT) Subject: [BioCatalogue-developers] [2515] branches/v1.1.0/app/views/services: Rearranged where the JavaScript codes go for loading up the tab contents async Message-ID: <20110914123820.04DBE1858381@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Wed Sep 14 08:41:04 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Wed, 14 Sep 2011 08:41:04 -0400 (EDT) Subject: [BioCatalogue-developers] [2516] branches/v1.1.0/app/controllers/services_controller.rb: doh Message-ID: <20110914124104.88DC81D78108@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Wed Sep 14 08:41:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Wed, 14 Sep 2011 13:41:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Created: (BIOCAT-695) Load the filters asynchronously on the services index page Message-ID: <15587565.2.1316004077166.JavaMail.jira@rosalind.cs.man.ac.uk> Load the filters asynchronously on the services index page ---------------------------------------------------------- Key: BIOCAT-695 URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-695 Project: BioCatalogue Issue Type: Improvement Components: Web Interface Affects Versions: 1.0.1 Reporter: Jiten Bhagat Assignee: Jiten Bhagat Fix For: 1.1.0 -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From noreply at rubyforge.org Wed Sep 14 08:47:15 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Wed, 14 Sep 2011 08:47:15 -0400 (EDT) Subject: [BioCatalogue-developers] [2517] branches/v1.1.0/app/views/services: Async tabs loading code should only be run AFTER the page has loaded! Message-ID: <20110914124715.E1B2C1D78108@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Wed Sep 14 11:32:05 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Wed, 14 Sep 2011 11:32:05 -0400 (EDT) Subject: [BioCatalogue-developers] [2518] branches/v1.1.0: [BIOCAT-695] Load the filters asynchronously on the services index page Message-ID: <20110914153205.786A51218276@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Wed Sep 14 11:55:56 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Wed, 14 Sep 2011 11:55:56 -0400 (EDT) Subject: [BioCatalogue-developers] [2519] branches/v1.1.0/app: [BIOCAT-519] Implement an initial "Examples" tab on the Service profile page. Message-ID: <20110914155556.8EBB71218275@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Mon Sep 19 08:09:06 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Mon, 19 Sep 2011 08:09:06 -0400 (EDT) Subject: [BioCatalogue-developers] [2520] branches/v1.1.0/lib/tasks/eb-eye_dump.rake: Encoding change ( as requested by the EBI). Message-ID: <20110919120907.C05E9185838E@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Thu Sep 22 07:53:16 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Thu, 22 Sep 2011 07:53:16 -0400 (EDT) Subject: [BioCatalogue-developers] [2521] branches/v1.1.0: [BIOCAT-519] Initial work on surfacing the data examples annotations in the new " Examples" tab. Message-ID: <20110922115316.7E7D7177994E@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Thu Sep 22 08:01:23 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Thu, 22 Sep 2011 08:01:23 -0400 (EDT) Subject: [BioCatalogue-developers] [2522] branches/v1.1.0/app/views/services/examples.html.erb: Cleaner labels Message-ID: <20110922120123.ABD96177994E@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Thu Sep 22 08:51:32 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Thu, 22 Sep 2011 08:51:32 -0400 (EDT) Subject: [BioCatalogue-developers] [2523] branches/v1.1.0: [BIOCAT-519] Allow addition of example_script annotations - snippets of code. Message-ID: <20110922125132.A7023185838D@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Thu Sep 22 09:19:33 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Thu, 22 Sep 2011 09:19:33 -0400 (EDT) Subject: [BioCatalogue-developers] [2524] branches/v1.1.0: Fixamaroo Message-ID: <20110922131933.CC54A185838D@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Thu Sep 22 09:27:56 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Thu, 22 Sep 2011 09:27:56 -0400 (EDT) Subject: [BioCatalogue-developers] [2525] branches/v1.1.0: [BIOCAT-520] Show warning on any test/ example scripts or any other code Message-ID: <20110922132756.C950B185838D@rubyforge.org> An HTML attachment was scrubbed... URL: From noreply at rubyforge.org Thu Sep 22 09:32:36 2011 From: noreply at rubyforge.org (noreply at rubyforge.org) Date: Thu, 22 Sep 2011 09:32:36 -0400 (EDT) Subject: [BioCatalogue-developers] [2526] trunk: merge -r 2449:2525 branches/v1.1.0 trunk Message-ID: <20110922133237.C0456177994E@rubyforge.org> An HTML attachment was scrubbed... URL: From issues at mygrid.org.uk Thu Sep 22 09:28:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 22 Sep 2011 14:28:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-520) Show warning on any test/example scripts or any other code In-Reply-To: <30307420.527.1289908470640.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <17600402.36.1316698097948.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-520?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-520. --------------------------------- Resolution: Implemented > Show warning on any test/example scripts or any other code > ---------------------------------------------------------- > > Key: BIOCAT-520 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-520 > Project: BioCatalogue > Issue Type: Sub-task > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Fix For: 1.1.0 > > > A warning message is required to make the user aware that any non-verified bits of code could have adverse/destructive effects and that the user should be cautious and/or verify before usage. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Thu Sep 22 09:36:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 22 Sep 2011 14:36:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-671) Benchmark/profile before/after the changes made to make the annotations support polymorphic values In-Reply-To: <4494613.2783.1310039635377.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <31093058.37.1316698577183.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-671?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-671. --------------------------------- Resolution: Fixed > Benchmark/profile before/after the changes made to make the annotations support polymorphic values > -------------------------------------------------------------------------------------------------- > > Key: BIOCAT-671 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-671 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App) > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Critical > Fix For: 1.1.0 > > > As part of this, do some benchmarking/profiling of the current state of annotations (eg: tags retrieval, filters, etc) to compare before/after. -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Thu Sep 22 09:38:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Thu, 22 Sep 2011 14:38:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-670) Write a one off verification test script to test the annotations migration In-Reply-To: <10011429.2781.1310039395361.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <8837564.38.1316698697169.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-670?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-670. --------------------------------- Resolution: Fixed > Write a one off verification test script to test the annotations migration > -------------------------------------------------------------------------- > > Key: BIOCAT-670 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-670 > Project: BioCatalogue > Issue Type: Sub-task > Components: Annotations (in App) > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Fix For: 1.1.0 > > > After migrating the current set of annotations to the new mechanism for supporting polymorphic annotation values, it is important to verify the data integrity of this! So write a verification test script that can be used to compare before and after state and check total data integrity and consistency! -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Fri Sep 23 11:31:17 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Fri, 23 Sep 2011 16:31:17 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-519) Implement an initial "Examples" tab on the Service profile page In-Reply-To: <23290831.528.1289908589158.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <26429344.44.1316791877209.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-519?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-519. --------------------------------- Resolution: Implemented > Implement an initial "Examples" tab on the Service profile page > --------------------------------------------------------------- > > Key: BIOCAT-519 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-519 > Project: BioCatalogue > Issue Type: New Feature > Components: Service Container, Web Interface > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Priority: Blocker > Fix For: 1.1.0 > > Original Estimate: 2 days > Remaining Estimate: 2 days > > An important need has been identified to show users examples of usage for services. > The proposed plan is to implement a new tab "Examples" for the Service profile page which can show the following: > - Links to examples > - Example scripts (both the test scripts and actual examples) > - Example workflows -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From issues at mygrid.org.uk Fri Sep 23 11:31:23 2011 From: issues at mygrid.org.uk (Jiten Bhagat (JIRA)) Date: Fri, 23 Sep 2011 16:31:23 +0100 (BST) Subject: [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-695) Load the filters asynchronously on the services index page In-Reply-To: <15587565.2.1316004077166.JavaMail.jira@rosalind.cs.man.ac.uk> Message-ID: <26438221.45.1316791883557.JavaMail.jira@rosalind.cs.man.ac.uk> [ http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-695?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jiten Bhagat resolved BIOCAT-695. --------------------------------- Resolution: Implemented > Load the filters asynchronously on the services index page > ---------------------------------------------------------- > > Key: BIOCAT-695 > URL: http://www.mygrid.org.uk/dev/issues/browse/BIOCAT-695 > Project: BioCatalogue > Issue Type: Improvement > Components: Web Interface > Affects Versions: 1.0.1 > Reporter: Jiten Bhagat > Assignee: Jiten Bhagat > Fix For: 1.1.0 > > -- This message is automatically generated by JIRA. - For more information on JIRA, see: http://www.atlassian.com/software/jira From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 10:33:41 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Wed, 28 Sep 2011 15:33:41 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109281433.p8SEXf8i028829@nicmail3.iomart.com> The original message was received at Wed, 28 Sep 2011 15:32:34 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 1078 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 10:33:46 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Wed, 28 Sep 2011 15:33:46 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109281433.p8SEXkKp028871@nicmail3.iomart.com> The original message was received at Wed, 28 Sep 2011 15:32:34 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 982 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 10:40:37 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Wed, 28 Sep 2011 15:40:37 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109281440.p8SEebWv002420@nicmail3.iomart.com> The original message was received at Wed, 28 Sep 2011 15:39:36 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 982 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 10:51:39 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Wed, 28 Sep 2011 15:51:39 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109281451.p8SEpdwf011881@nicmail3.iomart.com> The original message was received at Wed, 28 Sep 2011 15:50:34 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 983 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 11:09:47 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Wed, 28 Sep 2011 16:09:47 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109281509.p8SF9lXk028176@nicmail3.iomart.com> The original message was received at Wed, 28 Sep 2011 16:08:34 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 1007 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 17:40:53 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Wed, 28 Sep 2011 22:40:53 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109282140.p8SLer2g018075@nicmail3.iomart.com> The original message was received at Wed, 28 Sep 2011 22:39:52 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 19:36:01 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Thu, 29 Sep 2011 00:36:01 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109282336.p8SNa1D3001828@nicmail3.iomart.com> The original message was received at Thu, 29 Sep 2011 00:34:58 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Wed Sep 28 20:58:08 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Thu, 29 Sep 2011 01:58:08 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109290058.p8T0w8M5005949@nicmail3.iomart.com> The original message was received at Thu, 29 Sep 2011 01:57:07 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 980 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Thu Sep 29 02:59:53 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Thu, 29 Sep 2011 07:59:53 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109290659.p8T6xrRp028236@nicmail3.iomart.com> The original message was received at Thu, 29 Sep 2011 07:58:52 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Thu Sep 29 03:11:53 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Thu, 29 Sep 2011 08:11:53 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109290711.p8T7BrOn004010@nicmail3.iomart.com> The original message was received at Thu, 29 Sep 2011 08:10:51 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From jits at cs.man.ac.uk Thu Sep 29 09:36:17 2011 From: jits at cs.man.ac.uk (Jiten Bhagat) Date: Thu, 29 Sep 2011 14:36:17 +0100 Subject: [BioCatalogue-developers] Fwd: RE: Test Script for Service 'Mutalyzer' In-Reply-To: <975160E6B1A00C4F81384B96378DA3330A2E59@MAIL-MB3.lumcnet.prod.intern> References: <975160E6B1A00C4F81384B96378DA3330A2E59@MAIL-MB3.lumcnet.prod.intern> Message-ID: <4E847451.7000703@cs.man.ac.uk> Please see below. Jits -------- Original Message -------- Subject: RE: Test Script for Service 'Mutalyzer' Date: Mon, 26 Sep 2011 09:02:25 +0000 From: To: CC: , Dear Mannie and Jiten, Since I had not received warning messages from Biocatalogue for some time, I assumed that the Mutalyzer web service test was working properly. Today, I noticed that the test still has a 0% success rate, which is not a good advertisement. The current test script had been modified by Martijn Vermaat according to your suggestions, but apparently this was not sufficient. Maybe the script needs an additional modification, which is specific for your test system. We would appreciate it very much if you would be able to help us solve this problem. Thank you very much for your help. Best regards, Peter Dr. Peter E.M. Taschner Department of Human Genetics S-4-P Center for Human and Clinical Genetics Leiden University Medical Center P.O. Box 9600 2300 RC Leiden The Netherlands Tel. +31-71- 526 9424 Fax +31-71-526 8285 Visiting address: Building 2, Room R04-005, Einthovenweg 20, Leiden -----Original Message----- From: Vermaat, M. (HG) Sent: maandag 15 augustus 2011 13:38 To: Mannie Tagarira Cc: Taschner, P.E.M. (HG) Subject: Re: FW: Test Script for Service 'Mutalyzer' Dear Mannie, Unfortunately, our test script still fails. It is a very simple script and as far as I can see, it adheres to the provided documentation. We don't write anything to stdout, issue a status code of 0, and don't use any special libraries (except for the supported soappy). Could you have a look at what goes wrong? I also attached the script to this email. http://www.biocatalogue.org/service_tests/4904 kind regards, Martijn Vermaat > Van: Mannie Tagarira [mannie at mygrid.org.uk] > Verzonden: woensdag 27 juli 2011 15:23 > Aan: Taschner, P.E.M. (HG) > CC: Jiten Bhagat > Onderwerp: Test Script for Service 'Mutalyzer' > > Dear Peter, > > The BioCatalogue team has been investigating the cause of your test script's failure. We have identified a couple of issues which, when fixed, should hopefully resolve the issue. > > First and foremost, the test script provided does not return a status code upon completion. > > For a test script to be useable for monitoring by the BioCatalogue, a status code is required. A return code of 0 signifies success, whereas anything between 1 and 255 (inclusive) will indicate an error of some sort. > > I have noticed that your script prints out to command line the results during execution. There is however no way for us to capture this information and use it; you will be required to modify the test script so that it exits with one of the codes mentioned above. > > Secondly, the test script may be using one or more libraries which are not supported by the BioCatalogue's test harness. Please refer to the BioCatalogue wiki for more information on supported libraries (visit the link provided below). > > You may find the (updated) information provided on the BioCatalogue > wiki useful: > http://www.biocatalogue.org/wiki/doku.php?id=development:testscripts_i > n_biocatalogue > > If you have already adhered to the documentation provided and find that your test scripts are still failing, please feel free to contact either myself or Jiten. > > Regards, > Mannie -------------- next part -------------- An HTML attachment was scrubbed... URL: From MAILER-DAEMON at nicmail3.iomart.com Thu Sep 29 15:03:06 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Thu, 29 Sep 2011 20:03:06 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109291903.p8TJ36uZ003264@nicmail3.iomart.com> The original message was received at Thu, 29 Sep 2011 20:02:05 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Thu Sep 29 15:08:08 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Thu, 29 Sep 2011 20:08:08 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109291908.p8TJ88Po006630@nicmail3.iomart.com> The original message was received at Thu, 29 Sep 2011 20:07:07 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Thu Sep 29 19:25:43 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 00:25:43 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109292325.p8TNPhPw004552@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 00:24:42 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Thu Sep 29 21:41:20 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 02:41:20 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109300141.p8U1fKIj007036@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 02:40:19 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Thu Sep 29 23:14:36 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 04:14:36 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109300314.p8U3EaaR022416@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 04:13:35 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 02:39:40 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 07:39:40 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109300639.p8U6de2V017661@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 07:38:39 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 08:15:21 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 13:15:21 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301215.p8UCFLTa031810@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 13:14:18 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 08:31:21 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 13:31:21 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301231.p8UCVLTD031664@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 13:28:31 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 11:36:52 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 16:36:52 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301536.p8UFaqY6008446@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 16:35:11 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 11:59:59 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 16:59:59 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301559.p8UFxxTQ025729@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 16:58:20 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 984 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 12:25:55 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 17:25:55 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301625.p8UGPtF7010164@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 17:24:28 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 12:45:54 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 17:45:54 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301645.p8UGjsn5024166@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 17:44:52 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 14:30:19 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 19:30:19 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301830.p8UIUJHf025179@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 19:29:17 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 992 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 15:15:40 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Fri, 30 Sep 2011 20:15:40 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201109301915.p8UJFeFF018736@nicmail3.iomart.com> The original message was received at Fri, 30 Sep 2011 20:14:39 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 993 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 20:21:43 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Sat, 1 Oct 2011 01:21:43 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201110010021.p910Lh2j004209@nicmail3.iomart.com> The original message was received at Sat, 1 Oct 2011 01:20:42 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 990 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 20:26:29 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Sat, 1 Oct 2011 01:26:29 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201110010026.p910QTTx006307@nicmail3.iomart.com> The original message was received at Sat, 1 Oct 2011 01:25:28 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 990 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 20:31:39 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Sat, 1 Oct 2011 01:31:39 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201110010031.p910VdSr008333@nicmail3.iomart.com> The original message was received at Sat, 1 Oct 2011 01:30:37 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 990 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 20:35:16 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Sat, 1 Oct 2011 01:35:16 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201110010035.p910ZGVX009870@nicmail3.iomart.com> The original message was received at Sat, 1 Oct 2011 01:34:14 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 990 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 20:39:46 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Sat, 1 Oct 2011 01:39:46 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201110010039.p910dki4011793@nicmail3.iomart.com> The original message was received at Sat, 1 Oct 2011 01:38:45 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 990 bytes Desc: not available URL: From MAILER-DAEMON at nicmail3.iomart.com Fri Sep 30 20:45:16 2011 From: MAILER-DAEMON at nicmail3.iomart.com (Mail Delivery Subsystem) Date: Sat, 1 Oct 2011 01:45:16 +0100 Subject: [BioCatalogue-developers] Returned mail: see transcript for details Message-ID: <201110010045.p910jGBa014108@nicmail3.iomart.com> The original message was received at Sat, 1 Oct 2011 01:44:15 +0100 from smtp.ebi.ac.uk [193.62.194.225] ----- The following addresses had permanent fatal errors ----- (reason: 550 5.7.1 : Sender address rejected: Mail server in loopback network) ----- Transcript of session follows ----- ... while talking to rubyforge.org.: >>> DATA <<< 550 5.7.1 : Sender address rejected: Mail server in loopback network 550 5.1.1 ... User unknown <<< 554 5.5.1 Error: no valid recipients -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/rfc822-headers Size: 990 bytes Desc: not available URL: