May 2010 Archives by thread
Starting: Sat May 1 09:49:43 EDT 2010
Ending: Mon May 31 21:58:19 EDT 2010
Messages: 504
- [BioCatalogue-developers] EMBRACE Registry: 'INB:inb.bsc.es:getEntryFromSCOPPath' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:mmb.pcb.ub.es:getFlexAnalysisFromPCZ' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runMemeText' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:getStructureFromPDB' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runMetaAlignment' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runISSComplete' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:mmb.pcb.ub.es:getStructureFromPCZ' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:showPMUTonStructure' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPMUTHotSpotFromFASTA' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPMUTHotSpotFromFASTA' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:parseAminoAcidSequenceFromPDBText' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runNCut' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:getAminoAcidSequenceFromPDB' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPSIBlastpFromFASTA' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:getPDBFromTransfac' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [Fwd: Re: Services dead?]
Eric Nzuobontane
- [BioCatalogue-developers] latest test result in embrace registry
Eric Nzuobontane
- [BioCatalogue-developers] [1899] branches/service-updates-and-curation/db/migrate/ 20100422104102_create_wsdl_changes.rb: Bugfix for db: migrate script for WsdlChange model - forgot to add soap_service_id
noreply at rubyforge.org
- [BioCatalogue-developers] [1900] branches/web-service-ownership/app: service ownership work
noreply at rubyforge.org
- [BioCatalogue-developers] [1901] branches/service-updates-and-curation: - updated the clustering script
noreply at rubyforge.org
- [BioCatalogue-developers] [1902] branches/web-service-ownership/app/controllers/ responsibility_requests_controller.rb: bugfix - include requester in list of those informed when approval is made
noreply at rubyforge.org
- [BioCatalogue-developers] REST base endpoint
Franck Tanoh
- [BioCatalogue-developers] [Biocatalogue-support] Your account on BioCatalogue
Franck Tanoh
- [BioCatalogue-developers] [1903] branches/service-updates-and-curation: Service updates work: latest work; moving to a manual sync as need to take into account previous WSDLs that were parsed using the old parser .
noreply at rubyforge.org
- [BioCatalogue-developers] [1904] branches/service-updates-and-curation: changed . find_or_create_by_hostname calls to a more appropriate .
noreply at rubyforge.org
- [BioCatalogue-developers] REST service error
Franck Tanoh
- [BioCatalogue-developers] [1905] branches/service-updates-and-curation/script/biocatalogue/ sanity_check.rb: Added more data sanity checks, in particular for ServiceProviders and ServiceProviderHostnames.
noreply at rubyforge.org
- [BioCatalogue-developers] [1906] branches/service-updates-and-curation: Removed the ability to set a display_name annotation on a ServiceProvider.
noreply at rubyforge.org
- [BioCatalogue-developers] [1907] branches/service-updates-and-curation/lib/bio_catalogue/filtering/ services.rb: Removed display_name hackery from service provider filters generation.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'SignalP - Prediction of signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'SIDDbase' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] tag to remove
Franck Tanoh
- [BioCatalogue-developers] [1908] branches/service-updates-and-curation/app/models/service_deployment. rb: updated service deployment model to index the associated service provider' s hostnames (by way of a space separated string)
noreply at rubyforge.org
- [BioCatalogue-developers] [Fwd: Re: [Fwd: Re: [Biocatalogue-support] BioCatalogue feedback from María Pérez (maria.perez at uji.es)]]
Eric Nzuobontane
- [BioCatalogue-developers] [1909] branches/service-updates-and-curation/app: - implemented functionality to update ServiceProvider.name
noreply at rubyforge.org
- [BioCatalogue-developers] JIRA task list
Jiten Bhagat
- [BioCatalogue-developers] [1910] trunk/config/environments/production.rb: config option to use cronolog to rotate logs in production mode
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [1911] branches/service-updates-and-curation: code cleanup to make RestMethod and ServiceProvider a bit more RESTful
noreply at rubyforge.org
- [BioCatalogue-developers] [1912] branches/service-updates-and-curation/app/views/soap_operations/show .html.erb: Updated Soap Operation show page to always show the currently selected tab at the top .
noreply at rubyforge.org
- [BioCatalogue-developers] [1913] branches/service-updates-and-curation: Show port info in Soap Operation show page.
noreply at rubyforge.org
- [BioCatalogue-developers] [1914] branches/service-updates-and-curation: Service updater work: latest work on fleshing out the sync process.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:mmb.pcb.ub.es:getStructureFromMD_Trajectory' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:www.bioinfo.uma.es:getAminoAcidSequenceCollection' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromGenericSequenceToFASTA' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [1915] branches/service-updates-and-curation: Service updater work: modified the SoapServiceChange model so that the 'changelog' field is now an Array of enntries serialised into the db.
noreply at rubyforge.org
- [BioCatalogue-developers] mail for SAB
Franck Tanoh
- [BioCatalogue-developers] service monitoring failing
Franck Tanoh
- [BioCatalogue-developers] [1916] branches/service-updates-and-curation/app: - implemented basic merge of one ServiceProvider into another
noreply at rubyforge.org
- [BioCatalogue-developers] [1917] branches/service-updates-and-curation: - add validation to ServiceProvider model
noreply at rubyforge.org
- [BioCatalogue-developers] [1918] branches/service-updates-and-curation/app/views: Textual changes in the UI to clarify SOAP Operations and REST Enpoints.
noreply at rubyforge.org
- [BioCatalogue-developers] [1919] branches/service-updates-and-curation: [BIOCAT-315] Integrated the fix for Hash#from_xml as provided by Tod Jackson ( Emory University) and updated the legacy WSDL parser to use this.
noreply at rubyforge.org
- [BioCatalogue-developers] [1920] branches/service-updates-and-curation: Improvements to the Service listings - moved the annotations counts box down so that there is more room for the name of the service .
noreply at rubyforge.org
- [BioCatalogue-developers] [1921] branches/service-updates-and-curation: Nicer and more standards compliant styling for the annotations counts box.
noreply at rubyforge.org
- [BioCatalogue-developers] [1922] branches/web-service-ownership: removed the redundant responsible. rb module and re-factored function to return all responsibles for service
noreply at rubyforge.org
- [BioCatalogue-developers] [1923] branches/service-updates-and-curation/app: - updated indexes for RestParameter and RestRepresentation
noreply at rubyforge.org
- [BioCatalogue-developers] [1924] branches/service-updates-and-curation/app/models/rest_method.rb: Applied RestMethod comparator operator fix from trunk.
noreply at rubyforge.org
- [BioCatalogue-developers] [1925] branches/service-updates-and-curation/app/views: Fixed the listings partial for RestMethods - it was expecting a collection of RestResources instead of following the convention of expecting a list of the objects of the type the listing is for (ie: RestMethod in this case).
noreply at rubyforge.org
- [BioCatalogue-developers] [1926] branches/service-updates-and-curation/app/views/rest_methods/ _listing.html.erb: Better handling of the "base_endpoint" and "resource" local variables in cases where these can' t be provided easily into the listings partial.
noreply at rubyforge.org
- [BioCatalogue-developers] Important: refactorings for REST methods listings partial
Jiten Bhagat
- [BioCatalogue-developers] [1927] branches/service-updates-and-curation: Intial work on getting RestMethods returned in search.
noreply at rubyforge.org
- [BioCatalogue-developers] [1928] branches/service-updates-and-curation/app/models/rest_resource.rb: Applied RestResource comparator operator fix from trunk.
noreply at rubyforge.org
- [BioCatalogue-developers] [1929] branches/service-updates-and-curation: More work on getting RestMethods returned in search:
noreply at rubyforge.org
- [BioCatalogue-developers] [Production ERROR] services#index (ActionView::TemplateError) "undefined method `activated_at' for \"#<TestScript:0x2aaaaf844d68>\":TestScript"
Jiten Bhagat
- [BioCatalogue-developers] [1930] trunk/app/models/test_script.rb: bugfix : added activated_at method to test script
noreply at rubyforge.org
- [BioCatalogue-developers] [1931] branches/service-updates-and-curation: - pulled in bug fix for url template from trunk
noreply at rubyforge.org
- [BioCatalogue-developers] [1932] branches/service-updates-and-curation/app/models: - moved the after_destroy validation from the Service model to the ServiceDeployment model
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:mmb.pcb.ub.es:fromMD_TrajectoryToMD_TrajectoryCRD' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runMatScanGFFCollection' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'NetGlycate - Prediction of glycation of ? amino groups of lysines in mammalian proteins' changed to Warning
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPMUTHotSpotFromFASTA' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runFASS' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'DASxVO' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPHDFromAminoAcidSequence' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [Fwd: Re: Services dead?]
Eric Nzuobontane
- [BioCatalogue-developers] EMBRACE Registry: 'DASxVO' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runSGP2GFF' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runMatScanGFF' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:translateGeneIDGFFPredictions' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:parseFeatureAASequenceFromPMUTText' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:parseMotifMatricesFromMEME' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [1933] trunk/test: updated REST support functional and unit tests
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-319) Add /soap_services/wsdl_locations to XML Schema for REST API
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-320) Add /soap_services/wsdl_locations to REST API documentation
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1934] trunk: REST API work: implemented /soap_services/wsdl_locations, as requested by Javier Rios.
noreply at rubyforge.org
- [BioCatalogue-developers] [Fwd: [MYGRID] Upgraded jira and wiki]
Jiten Bhagat
- [BioCatalogue-developers] About the BioCatalogue API
Jiten Bhagat
- [BioCatalogue-developers] FYI
Eric Nzuobontane
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-321) Fix cronolog log rotation problem
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Work started: (BIOCAT-305) Allow users to take ownership/claim responsibility of services
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Work started: (BIOCAT-307) Implement SoapService WSDL sync process
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1935] branches/service-updates-and-curation/app/models/soap_service.rb: Service update checker work: initial, complete sync method for the SoapService model.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-322) Show "archived operations/inputs/outputs" in UI
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-323) Show archived things in greyed out box and text (and possibly collapsed)
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1936] branches/service-updates-and-curation: [BIOCAT-233] Initial implementation of the acts_as_archived mechanism.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'NetGlycate - Prediction of glycation of ? amino groups of lysines in mammalian proteins' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runDisruptionPhysicalProperties' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPSIBlastpFromFASTA' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Work started: (BIOCAT-233) Need to take into account old/deprecated/deleted services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Work stopped: (BIOCAT-307) Implement SoapService WSDL sync process
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-307) Implement SoapService WSDL sync process
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-233) Need to take into account old/deprecated/deleted services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Work stopped: (BIOCAT-233) Need to take into account old/deprecated/deleted services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-233) Need to take into account old/deprecated/deleted services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-324) Archived services should not be monitored anymore
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-325) Implement filter for "Archived Services"
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-326) Implement option in services listing to ignore archived services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-327) Implement option in search results to ignore archived items
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-328) For items that are archived add a "this is archived" message at the top of the 'show' page for the item
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-328) For items that are archived add a "this is archived" message at the top of the 'show' page for the item
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-329) Need to deal with archived SoapOperation, SoapInput and SoapOutput items in the UI
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-330) Implement button to allow curators/admins to mark a service as archived
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Deleted: (BIOCAT-314) Show changelogs on service show page
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Deleted: (BIOCAT-322) Show "archived operations/inputs/outputs" in UI
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-331) Show changelogs on service show page
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1937] branches/service-updates-and-curation: [BIOCAT-323] Archived Services and SoapOperations are now shown in grey and collapsed in listings .
noreply at rubyforge.org
- [BioCatalogue-developers] [1938] branches/service-updates-and-curation: Consolidated some of the styling for the archived styles.
noreply at rubyforge.org
- [BioCatalogue-developers] [1939] branches/service-updates-and-curation/public/stylesheets/styles.css: Tightened up the listing_item style.
noreply at rubyforge.org
- [BioCatalogue-developers] [1940] branches/service-updates-and-curation/app: [BIOCAT-329] Show " archived operations" as a separate list in the operations tab.
noreply at rubyforge.org
- [BioCatalogue-developers] [1941] branches/service-updates-and-curation: [BIOCAT-329] Archived operations on the 'show' operation page are shown in a separate collection and greyed out.
noreply at rubyforge.org
- [BioCatalogue-developers] [1942] branches/service-updates-and-curation/app/views/soap_services/ _show_service_tabs.html.erb: Added an info icon with tooltip next to the " archived operations" header to explain what they are.
noreply at rubyforge.org
- [BioCatalogue-developers] [1943] branches/service-updates-and-curation: [BIOCAT-328] Added an archived status banner for archived services / SOAP operation pages.
noreply at rubyforge.org
- [BioCatalogue-developers] [1944] branches/service-updates-and-curation: Nicer styling for the " actions" drop down menu, and moved it to the left hand side where users usually look for such a thing .
noreply at rubyforge.org
- [BioCatalogue-developers] [1945] branches/service-updates-and-curation/app/views/search/show.html.erb : Fixed a usability issue with the search page (as reported by Alan) whereby the "next page" button is first on the right then moves to the left when paging occurs, which was confusing.
noreply at rubyforge.org
- [BioCatalogue-developers] [1946] branches/service-updates-and-curation: Tweaks to the h4 style.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-332) Allow linking to alternative services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1947] branches/service-updates-and-curation: [BIOCAT-329] Archived inputs and outputs are now shown as separate collections.
noreply at rubyforge.org
- [BioCatalogue-developers] [1948] branches/service-updates-and-curation: simple spreadsheet export implementation
noreply at rubyforge.org
- [BioCatalogue-developers] [1949] branches/service-updates-and-curation/vendor/gems/spreadsheet-0.6.4. 1/.specification: Updated specs for spreadsheet gem
noreply at rubyforge.org
- [BioCatalogue-developers] [1950] branches/service-updates-and-curation: Added missing ruby-ole gem ( that is required by the spreadsheet gem).
noreply at rubyforge.org
- [BioCatalogue-developers] [1951] branches/service-updates-and-curation/app/models/soap_service.rb: Bugfixes for the WSDL sync method.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:inb.bsc.es:getEntryFromHSSP' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPSIBlastpFromAminoAcidSequence' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPSIBlastpFromAminoAcidSequence' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-333) paging does not work when a providers services are listed from service show page
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Work started: (BIOCAT-316) url checker should follow redirects
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-316) url checker should follow redirects
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:parseFeatureAASequenceFromPMUTText' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [1952] trunk/lib/bio_catalogue: Moved the checking of urls & endpoints to it own module and implemented following redirects for URL checks .
noreply at rubyforge.org
- [BioCatalogue-developers] [1953] trunk/lib/bio_catalogue: follow convention for naming modules
noreply at rubyforge.org
- [BioCatalogue-developers] Removing the Rubyforge tasks list
Jiten Bhagat
- [BioCatalogue-developers] Latest service annotation report
Jiten Bhagat
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-334) Monitor example endpoints for REST services
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-335) Allow enabling/disabling of availability checks from UI
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [1954] branches/service-updates-and-curation: [BIOCAT-307] More fixes for the SoapService wsdl sync method.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToDNASequenceCollection' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:parseMultipleAlignFromBLASTText' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [1955] trunk/test: REST support test updates
noreply at rubyforge.org
- [BioCatalogue-developers] [1956] branches/service-updates-and-curation/vendor/gems: gem cleanup
noreply at rubyforge.org
- [BioCatalogue-developers] [1957] branches/service-updates-and-curation/config/environment.rb: appending last commit...
noreply at rubyforge.org
- [BioCatalogue-developers] [1958] trunk: enable activation/ de-activation of availability checks from UI and monitor example endpoints for rest services
noreply at rubyforge.org
- [BioCatalogue-developers] [1959] branches/service-updates-and-curation/vendor/plugins/annotations: Updated annotations plugin to latest.
noreply at rubyforge.org
- [BioCatalogue-developers] [1960] branches/service-updates-and-curation/config/routes.rb: Changed route for curation controller to be more restful
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-336) Implement a bulk create Annotations API endpoint for the curation by spreadsheets app
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-337) Implement an object_for_uri method that finds the object referred to by a URI in the REST API
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1961] branches/service-updates-and-curation/lib/bio_catalogue/util.rb: Added a generic way of logging exceptions.
noreply at rubyforge.org
- [BioCatalogue-developers] [1962] branches/service-updates-and-curation/lib/bio_catalogue/util.rb: Improved the log_exception method to be able to log as errors, warnings or just info.
noreply at rubyforge.org
- [BioCatalogue-developers] [1963] branches/service-updates-and-curation/lib/bio_catalogue/api.rb: [ BIOCAT-337] Implemented an object_for_uri method that finds the object referred to by a URI in the REST API .
noreply at rubyforge.org
- [BioCatalogue-developers] [1964] branches/service-updates-and-curation: removed spreadsheet work from the codebase
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-338) fix rake task to check wsdl parsing
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [1965] branches/service-updates-and-curation: [BIOCAT-336] Initial work on the /annotations/bulk_create endpoint.
noreply at rubyforge.org
- [BioCatalogue-developers] [1966] branches/service-updates-and-curation/app/controllers/ annotations_controller.rb: [BIOCAT-336] Added more documentation to the / annotations/bulk_create method.
noreply at rubyforge.org
- [BioCatalogue-developers] [1967] branches/service-updates-and-curation: [BIOCAT-336] Refactored the bulk_create mechanism to the BioCatalogue:: Annotations module so that it can be used in other places easily.
noreply at rubyforge.org
- [BioCatalogue-developers] [1968] branches/service-updates-and-curation/test/unit/lib/bio_catalogue/ annotations_test.rb: Prepared a test file for the BioCatalogue: Annotations module.
noreply at rubyforge.org
- [BioCatalogue-developers] [1969] branches/service-updates-and-curation/app/controllers/ annotations_controller.rb: [BIOCAT-336] Allow admins to do bulk_create of annotations too.
noreply at rubyforge.org
- [BioCatalogue-developers] [1970] branches/service-updates-and-curation/app/controllers/ application_controller.rb: Basic authentication for JSON too.
noreply at rubyforge.org
- [BioCatalogue-developers] [1971] branches/service-updates-and-curation/lib/bio_catalogue/annotations. rb: Fixed typo in a comment
noreply at rubyforge.org
- [BioCatalogue-developers] [1972] branches/service-updates-and-curation/app/controllers/ annotations_controller.rb: [BIOCAT-336] Actually allow the bulk_create action through!
noreply at rubyforge.org
- [BioCatalogue-developers] [1973] trunk/lib/tasks/check_wsdl_parse.rake: fix for wsdl parse task
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPHDFromFASTA' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [1974] branches/service-updates-and-curation: [BIOCAT-336] Refactored the way the BioCatalogue: Annotations works and how the XML and JSON results are generated, so that things are simpler.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runFlexibilityPhysicalProperties' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToAminoAcidSequenceCollection' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:showPMUTonStructure' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:cnio.es:runMBFromMSF' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runGeneIDGFF' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runMultiPairwiseMetaAlignmentGFF' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-339) Convert INBTester.pl templates to URL checks
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runMetaAlignmentGFF' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-340) For failing tests(checks) indicate for how long they have been failing
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [Fwd: Re: Question on local set up]
Jiten Bhagat
- [BioCatalogue-developers] [1975] branches/service-updates-and-curation/app/models/soap_service.rb: [ BIOCAT-307] Bugfix for the WSDL sync - endpoint was not being parsed correctly.
noreply at rubyforge.org
- [BioCatalogue-developers] [1976] branches/service-updates-and-curation/app/models/soap_service.rb: [ BIOCAT-307] More fixes for the WSDL sync, and added namespace to solr indexing.
noreply at rubyforge.org
- [BioCatalogue-developers] Service update checker - examples of the kinds of changelogs I am seeing...
Jiten Bhagat
- [BioCatalogue-developers] [1977] branches/service-updates-and-curation/app/models/soap_service.rb: [ BIOCAT-307] Better handling of SoapOperations with the same names but for different ports .
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-307) Implement SoapService WSDL sync process
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1978] branches/service-updates-and-curation: updated service provider merging to take migrate the annotations as well
noreply at rubyforge.org
- [BioCatalogue-developers] [1979] branches/service-updates-and-curation/app/models/soap_service.rb: Use standard exception logging.
noreply at rubyforge.org
- [BioCatalogue-developers] [1980] branches/service-updates-and-curation/lib: [BIOCAT-308] Intial work on implementing the jobs and rake task for running the service update checker .
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runOFunCUT' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [1981] branches/service-updates-and-curation/lib/bio_catalogue/jobs/ run_service_updater.rb: Bugfix for RunServiceUpdater job.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-308) Implement background job(s) for running the service update checker
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [Fwd: Re: Services dead?]
Eric Nzuobontane
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-341) Possibility to harvest soaplab service description during submission
Franck Tanoh (JIRA)
- [BioCatalogue-developers] [1982] branches/service-updates-and-curation/lib/bio_catalogue/delayed_jobs .rb: Enhanced the job_exists? method to allow you to check for actual fields, like "service_id: 9" etc.
noreply at rubyforge.org
- [BioCatalogue-developers] [1983] branches/service-updates-and-curation: [BIOCAT-309] Implemented " Check for Updates" button on service show page.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-309) Add "Check for Updates" button to service show page
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1984] branches/service-updates-and-curation/app: [BIOCAT-310] Submit a job to run the update checker after a user tries to submit a service that already exists in the catalogue .
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-310) Run update checker after a user tries to submit a duplicate service
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-310) Run update checker after a user tries to submit a duplicate service
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-308) Implement background job(s) for running the service update checker
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-307) Implement SoapService WSDL sync process
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-311) Implement a mechanism to record changes made to SOAP services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-309) Add "Check for Updates" button to service show page
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1985] branches/web-service-ownership/app/models/user_mailer.rb: use sender email constant for as return address for BioCatalogue emails
noreply at rubyforge.org
- [BioCatalogue-developers] [1986] branches/service-updates-and-curation: [BIOCAT-330] Implemented " archive" and "unarchive" functionality in the UI to allow admins, curators and service submitters to archive/unarchive services.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-342) Infinitely recursive validates_associated in ServiceTest and TestScript cause failures in save
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1987] branches/service-updates-and-curation/app/views/layouts/_flashes. html.erb: Slightly better styling for the notice flash
noreply at rubyforge.org
- [BioCatalogue-developers] [1988] branches/service-updates-and-curation: When archiving, should set the updated_at field for the object too.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-233) Need to take into account old/deprecated/deleted services
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-343) Implement an "Activity" tab on a service's page
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1989] branches/rest-write-api/: Removing old branch as it is now stale ( a new branch for the REST write API will be created at a later stage)
noreply at rubyforge.org
- [BioCatalogue-developers] [1990] branches/service-provider-mapping/: Removing unused branch ( to avoid confusion) as the service provider mapping work was done in service-updates-and-curation .
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-344) Update soaplab services descriptions by calling the describe method
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-345) update the annotations counts mechanism to take into account these new fields
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [1991] branches/service-updates-and-curation/app/models/soap_service.rb: [ BIOCAT-307] Bugfixes for the handling of inputs and outputs in the WSDL sync method.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-307) Implement SoapService WSDL sync process
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1992] branches/service-updates-and-curation/app/models/soap_service.rb: [ BIOCAT-307] Another bugfix for the handling of inputs and outputs in the WSDL sync method .
noreply at rubyforge.org
- [BioCatalogue-developers] [1993] trunk/config/environments/production.rb: By default, disable the rotating of logs.
noreply at rubyforge.org
- [BioCatalogue-developers] [1994] trunk/script/biocatalogue/service_annotation_report.rb: Bugfix for the example data annotations check.
noreply at rubyforge.org
- [BioCatalogue-developers] [1995] branches/service-updates-and-curation/app/views: Moved the activity UI partial into the shared folder ( in preparation for usage in other parts of the UI).
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-346) Add entries to the homepage activity feed for when changes have been found
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [1996] trunk: minor changes to service monitoring work and initial work soaplab service description call
noreply at rubyforge.org
- [BioCatalogue-developers] [1997] trunk: bugfix test_script model and fix of related tests
noreply at rubyforge.org
- [BioCatalogue-developers] [1998] branches/service-updates-and-curation: [BIOCAT-331] Initial work on the new "News" tab on the service page.
noreply at rubyforge.org
- [BioCatalogue-developers] [1999] trunk: merged web-service-ownership branch into trunk
noreply at rubyforge.org
- [BioCatalogue-developers] [2000] branches/service-updates-and-curation: Refactored the tabber startup code - moved into a non-obtrusive JS way.
noreply at rubyforge.org
- [BioCatalogue-developers] [2001] branches/service-updates-and-curation/app/controllers/ services_controller.rb: Updated the text for flash messages when an update check has been requested for a service .
noreply at rubyforge.org
- [BioCatalogue-developers] info from the web-service-ownership merge into trunck
Eric Nzuobontane
- [BioCatalogue-developers] Confusion on service responsibility
Jiten Bhagat
- [BioCatalogue-developers] [2002] trunk: Merged revisions 1817:2001 from 'service-updates-and-curation ' to trunk.
noreply at rubyforge.org
- [BioCatalogue-developers] [2003] trunk/app/views/soap_operations/_listing.html.erb: Style fixes for the SOAP operations partial
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:fromFASTAToDNASequence' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2004] trunk/app/views/services/show.html.erb: Fixes for the actions dropdown menu for the Service page.
noreply at rubyforge.org
- [BioCatalogue-developers] Running the Service Provider Clustering Script
Eric Nzuobontane
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-347) Deploy new release on the test server
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-348) Create release notes for new code base deployment
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] pre-release notes
Eric Nzuobontane
- [BioCatalogue-developers] Jeff Rogers is now following you on Twitter!
Twitter
- [BioCatalogue-developers] EMBRACE Registry: 'INB:inb.bsc.es:getEntryFromFSSP' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2005] trunk/app/models/soap_service.rb: Removed the read only constraint from the wsdl_files collection for SoapService as this was causing failure when running the update checker .
noreply at rubyforge.org
- [BioCatalogue-developers] [2006] trunk: Fixes for the background jobs for the service updater.
noreply at rubyforge.org
- [BioCatalogue-developers] http://localhost:3000/announcements/14
Eric Nzuobontane
- [BioCatalogue-developers] [Fwd: Re: EdUnify (BioCatalogue) flash demo]
Jiten Bhagat
- [BioCatalogue-developers] EMBRACE Registry: 'BLASTatlas' changed to Warning
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runISSComplete' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-349) Test the newly deployed code on biocatalogue test server
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-350) investigate why soaplab autotagging failed during submission
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:cnio.es:runPrank' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2007] trunk/script/biocatalogue/sanity_check.rb: Added check for orphaned Annotations, and some textual changes to the reporting.
noreply at rubyforge.org
- [BioCatalogue-developers] [2008] trunk/app/models/service_provider.rb: - bugfix: ServiceProvider. merge_into now takes into account the annotations made by the service provider in addition to those made on the service provider
noreply at rubyforge.org
- [BioCatalogue-developers] [2009] trunk/app/models/test_result.rb: Fix for logging for status changes in ActivityLogs - the ActivityLog#referenced value should be the corresponding Service .
noreply at rubyforge.org
- [BioCatalogue-developers] [2010] trunk: [BIOCAT-306] Added SoapServiceChange create events to the homepage activity list.
noreply at rubyforge.org
- [BioCatalogue-developers] [2011] trunk/script/biocatalogue/sanity_check.rb: Added more sanity checks.
noreply at rubyforge.org
- [BioCatalogue-developers] [2012] trunk: Major refactoring into the way the Activity Feeds are generated.
noreply at rubyforge.org
- [BioCatalogue-developers] [2013] trunk: Added "Monitoring Status Changes" box to the homepage and a " Monitoring" tab to the /latest page.
noreply at rubyforge.org
- [BioCatalogue-developers] [2014] trunk/app/views/home/latest.html.erb: Rearranged tabs on the / latest page to Activity, Monitoring, Services, Contributors.
noreply at rubyforge.org
- [BioCatalogue-developers] [2015] trunk: Favourite/Unfavourite added to the 'Actions' dropdown menu for service page.
noreply at rubyforge.org
- [BioCatalogue-developers] [2016] trunk: Initial work on the Latest Activity for the News tab for each service.
noreply at rubyforge.org
- [BioCatalogue-developers] [2017] trunk/app/views/services/_news_tab.html.erb: Removed redundant heading.
noreply at rubyforge.org
- [BioCatalogue-developers] [2018] trunk: Various fixes and tweaks to the activity feed on the service page.
noreply at rubyforge.org
- [BioCatalogue-developers] [2019] trunk: Enhancements to show more activity on the news tab of the service page.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:runSGP2GFF' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runNCut' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'BLAST blastp protein similarity search (CNRS IBCP)' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runPMUTHotSpotFromAminoAcidSequence' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:showPMUTonStructure' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:inb.bsc.es:getNucleotideSequence' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'WHAT IF Web Services' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runFASSFromClustalw' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2020] trunk/lib/bio_catalogue/monitoring.rb: bugfix for updating rest endpoints
noreply at rubyforge.org
- [BioCatalogue-developers] [2021] trunk/app/models/annotation.rb: Added an after_destroy callback to the Annotation model to take care of cleaning up associated UrlMonitor /ServiceTest records on deletion.
noreply at rubyforge.org
- [BioCatalogue-developers] [2022] trunk/lib/bio_catalogue/monitoring.rb: Fixes to the monitoring: Handling exceptions & limiting number of urls to monitored per service
noreply at rubyforge.org
- [BioCatalogue-developers] [2023] trunk/lib/bio_catalogue/monitoring.rb: fix typo
noreply at rubyforge.org
- [BioCatalogue-developers] [2024] trunk/app/views: Various fixes to the current ATOM feeds.
noreply at rubyforge.org
- [BioCatalogue-developers] [2025] trunk/app/views/announcements/index.atom.builder: Turns out manually setting the feed entry updated is not required.
noreply at rubyforge.org
- [BioCatalogue-developers] [2026] trunk: ATOM feeds for Latest Activity, Service Monitoring Status Changes and each individual Service' s Latest Activity / News.
noreply at rubyforge.org
- [BioCatalogue-developers] [2027] trunk/app/views/widgets/_action_bar.html.erb: Added the link to the "getting started" page on the drop down menu on the action bar ( after the Search By Data option).
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-227) Implement RSS/atom feeds for services and activity feeds
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-227) Implement RSS/atom feeds for services and activity feeds
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [2028] trunk/app: Added feed icon to the Service 'News' tab.
noreply at rubyforge.org
- [BioCatalogue-developers] [2029] trunk/app/helpers/activity_feeds_helper.rb: Added more info to the activity feed entry for SoapServiceChanges.
noreply at rubyforge.org
- [BioCatalogue-developers] [2030] trunk/lib/bio_catalogue/activity_feeds.rb: Added monitoring status changes to a Service's latest activity feed.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-351) Icons of the 'Monitoring test changes' activity on the homepage should be the same as those use to monitor services (red, green, blue circle)
Franck Tanoh (JIRA)
- [BioCatalogue-developers] [2031] trunk/script/biocatalogue/fix_activity_logs_for_status_change_may10. rb: Fix to the ActivityLog records for 'status_change' events - previously the 'referenced' was not being set to the associated Service, so activity feeds could not pick them up.
noreply at rubyforge.org
- [BioCatalogue-developers] [2032] trunk/app: Status changes.
noreply at rubyforge.org
- [BioCatalogue-developers] [2033] trunk/app/views: use display names for objects in emails instead of urls
noreply at rubyforge.org
- [BioCatalogue-developers] [2034] trunk: [BIOCAT-351] Added appropriate monitoring icons next to the status change list.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-227) Implement RSS/atom feeds for services and activity feeds
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-352) Make the Activity Feed in the Service 'News' tab load asynchronously
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [2035] trunk/app/views/shared/_activity.atom.builder: Make things more " ATOM-friendly" in the activity entries ATOM partial.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'CLUSTAL W multiple alignment (CNRS IBCP)' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2036] trunk/app/views: Fixes for some views.
noreply at rubyforge.org
- [BioCatalogue-developers] [2037] trunk/app/views/user_mailer: bugfix : Use fully qualified name for ' display_name' function i.e BioCatalogue::Util.display_name
noreply at rubyforge.org
- [BioCatalogue-developers] [2038] trunk/app/views/responsibility_requests/index.html.erb: use display name function instead of service.name directly
noreply at rubyforge.org
- [BioCatalogue-developers] [2039] trunk: Fix for authorisation of actions on things within a service ( eg: annotations) by people who are given responsibility.
noreply at rubyforge.org
- [BioCatalogue-developers] [2040] trunk/lib/bio_catalogue/auth.rb: Refactoring to make things clearer.
noreply at rubyforge.org
- [BioCatalogue-developers] [2041] trunk/app/helpers/activity_feeds_helper.rb: Fix for the activity logs for monitoring status change entries where there is no previous result because the service was unchecked .
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'ConsensusPathDB' changed to Warning
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'ConsensusPathDB' changed to Warning
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2042] trunk/app/views/responsibility_requests: UI cleanup.
noreply at rubyforge.org
- [BioCatalogue-developers] [2043] trunk: Various UI improvements.
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'ConsensusPathDB' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'ConsensusPathDB' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2044] trunk/app: moved the edit button for service provider, next to the provider name to make it more obvious what is being edited
noreply at rubyforge.org
- [BioCatalogue-developers] [2045] trunk: Various UI changes based on feedback from Paul and Franck.
noreply at rubyforge.org
- [BioCatalogue-developers] [2046] trunk: Major refactoring of the Service show page 'News' tab - now the activity feed is lazy loaded in the background AFTER the page is loaded .
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-227) Implement RSS/atom feeds for services and activity feeds
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [2047] trunk/public/stylesheets/styles.css: Small style fix.
noreply at rubyforge.org
- [BioCatalogue-developers] [2048] trunk/lib/bio_catalogue/activity_feeds.rb: Minor enhancement to prevent SQL queries with duplicate values in the conditions .
noreply at rubyforge.org
- [BioCatalogue-developers] [2049] trunk/vendor/plugins/atom_feed_helper/: Removed the atom_feed_helper as this was overriding the built in Rails AtomFeedHelper , which is much better now.
noreply at rubyforge.org
- [BioCatalogue-developers] [2050] trunk/app/views/shared/_activity.atom.builder: Minor tweak to activity feed ATOM output.
noreply at rubyforge.org
- [BioCatalogue-developers] [2051] trunk/lib/bio_catalogue/monitoring.rb: only add example endpoints from submitters and admins to monitoring
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'phosphoELMdb' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'phosphoELMdb' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] Steps needed for the codebase update
Eric Nzuobontane
- [BioCatalogue-developers] Release notes wiki page
Jiten Bhagat
- [BioCatalogue-developers] [JIRA] Work stopped: (BIOCAT-304) Investigate twittering failure on live site
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Resolved: (BIOCAT-305) Allow users to take ownership/claim responsibility of services
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [2052] trunk/lib/bio_catalogue/monitoring.rb: Extend trust to all responsible for a service & and improve performance in creation of example endpoint monitors
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-353) Remove/Implement endpoints: /soap_operation/{id}/inputs AND /soap_operation/{id}/outputs
Mannie Tagarira (JIRA)
- [BioCatalogue-developers] starting the update now
Eric Nzuobontane
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runParmbsc0PhysicalProperties' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-354) Deploy new release on the live server [May 2010 Release]
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-355) recreate the search index(by running solr reindex)
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-356) verify the MANY test status emails received at the code update on May 26, 2010
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-357) Add helper text to test script submission UI
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-358) Add all appropriate REST model resources to the API
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Work logged: (BIOCAT-298) Add REST Endpoints to search results web UI and API
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Commented: (BIOCAT-298) Add REST Endpoints to search results web UI and API
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-359) Cleanup pre-release notes and move them to the release notes section
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [2053] trunk: Cleaner way of getting the Time for x days ago.
noreply at rubyforge.org
- [BioCatalogue-developers] [2054] trunk/app/views/search/show.xml.builder: Improved output of search results in the REST API.
noreply at rubyforge.org
- [BioCatalogue-developers] [2055] trunk/app/controllers/search_controller.rb: Ignore rest_methods search scope in the API, for now.
noreply at rubyforge.org
- [BioCatalogue-developers] [2056] trunk/app/controllers/search_controller.rb: Minor fix
noreply at rubyforge.org
- [BioCatalogue-developers] [2057] trunk/app/views/search/show.xml.builder: Fixed silly mistakes!
noreply at rubyforge.org
- [BioCatalogue-developers] [2058] trunk/app/views/search/show.xml.builder: For Search REST API - don' t generate the related link to the rest_methods scope.
noreply at rubyforge.org
- [BioCatalogue-developers] [2059] trunk/public/2009/xml/rest/schema-v1.xsd: Updated REST API schema to take into account latest changes to search.
noreply at rubyforge.org
- [BioCatalogue-developers] [2060] trunk: More work on ignoring rest_methods search scope in the API.
noreply at rubyforge.org
- [BioCatalogue-developers] [2061] trunk/app/views/agents/show.html.erb: Removed redundant tabber code.
noreply at rubyforge.org
- [BioCatalogue-developers] [2062] trunk/app/views/users/show.xml.builder: Minor textual change.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-360) Add the requester (name) and possible role of approver in responsibility request approval mail
Eric Nzuobontane (JIRA)
- [BioCatalogue-developers] [2063] trunk/app: Added "Other Services Responsible For" tab on user profiles.
noreply at rubyforge.org
- [BioCatalogue-developers] [2064] trunk/app/views: Added "Responsbility Requests" link to login links section.
noreply at rubyforge.org
- [BioCatalogue-developers] [2065] trunk/app/views/responsibility_requests/index.html.erb: UI tweaks to the pending responsbility requests index page.
noreply at rubyforge.org
- [BioCatalogue-developers] [2066] trunk/app/views/responsibility_requests/index.html.erb: Wording change.
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-361) Add a "User responsible for this service" section on the service's profile page
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:cnio.es:runFirestar' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:cnio.es:runFASS' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB:mmb.pcb.ub.es:runParmbsc0PhysicalProperties' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [2067] trunk: reverting to the original endpoint check rule of accepting any xml response as indicating availability and adding some help text to test script UI
noreply at rubyforge.org
- [BioCatalogue-developers] [2068] trunk/app/views/test_scripts/_about_testscripts.html.erb: fix typo
noreply at rubyforge.org
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-362) Add archive/unarchive events to the ActivityLogs and then the activity feed(s)
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-363) Is it ok to replace the 'Welcome + member name' by something like 'my stuff'. The reason is because It's currently not obvious how to see or access all your services and other stuff in the biocat [ i know search can help but it's not the best option]
Franck Tanoh (JIRA)
- [BioCatalogue-developers] [2069] trunk/vendor/plugins/annotations: Pulled latest Annotations plugin changes which fixes the sorting order of annotations that have been updated
noreply at rubyforge.org
- [BioCatalogue-developers] [2070] trunk/vendor/plugins/annotations/.git/objects: Missing files for previous commit
noreply at rubyforge.org
- [BioCatalogue-developers] EMBRACE Registry: 'Genome Atlas' changed to Warning
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'MultAlin multiple alignment (CNRS IBCP)' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] [JIRA] Created: (BIOCAT-364) The service update checker should also update ServiceDeployment locations
Jiten Bhagat (JIRA)
- [BioCatalogue-developers] EMBRACE Registry: 'INB:genome.imim.es:parseMotifMatricesFromMEME' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'INB-dev:cnio.es:runFirestar' changed to Passed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'FASTA protein similarity search (CNRS IBCP)' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'PcProf predict physico-chemical profiles of proteins (CNRS IBCP)' changed to Failed
utopia at cs.man.ac.uk
- [BioCatalogue-developers] EMBRACE Registry: 'SIMPA protein secondary structure prediction (CNRS IBCP)' changed to Failed
utopia at cs.man.ac.uk
Last message date:
Mon May 31 21:58:19 EDT 2010
Archived on: Mon May 31 21:58:29 EDT 2010
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